3P48	Hydrolase	date	Oct 06, 2010
title	Structure Of The Yeast Dutpase Dut1 In Complex With Dumpnpp
authors	P.Petit, A.U.Singer, E.Evdokimova, M.Kudritska, A.M.Edwards, A.F. A.Savchenko, Ontario Centre For Structural Proteomics (Ocsp)
compound		source
Molecule: Deoxyuridine 5'-Triphosphate Nucleotidohydrolase Chain: A, B, C Synonym: Dutpase, Dutp Pyrophosphatase Ec: 3.6.1.23 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast Organism_taxid: 4932 Gene: Dut1, Ybr252w, Ybr1705 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 21 21 21	R_factor 0.154 R_Free 0.193
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.784 58.868 112.381 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.67 Å
ligand	DUP, MG	enzyme	Hydrolase E.C.3.6.1.23 BRENDA
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Structure and activity of the Saccharomyces cerevisiae dUTP pyrophosphatase DUT1, an essential housekeeping enzyme., Tchigvintsev A, Singer AU, Flick R, Petit P, Brown G, Evdokimova E, Savchenko A, Yakunin AF, Biochem J. 2011 Jul 15;437(2):243-53. PMID:21548881

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk] Biological Unit Coordinates (3p48.pdb1.gz) 67 Kb LPC: Ligand-Protein Contacts for 3P48 CSU: Contacts of Structural Units for 3P48 Structure Factors (635 Kb) Retrieve 3P48 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3P48 from S2C, [Save to disk] Re-refined 3p48 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3P48, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3p48_C] [3p48] [3p48_B] [3p48_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3P48

Community annotation for 3P48 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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