3PP2 Hydrolase Activator date Nov 23, 2010
title Crystal Structure Of The Pleckstrin Homology Domain Of Arhga
authors L.Shen, W.Tempel, Y.Tong, L.Nedyalkova, Y.Li, A.K.Wernimont, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, H.Park, Struc Genomics Consortium (Sgc)
compound source
Molecule: Rho Gtpase-Activating Protein 27
Chain: A, B
Fragment: Unp Residues 491-613
Synonym: Cin85-Associated Multi-Domain-Containing Rho Gtpas Activating Protein 1, Rho-Type Gtpase-Activating Protein 27
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arhgap27, Camgap1, Sh3d20, Pp905
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-V2r-Prare2
Expression_system_plasmid: Pnic-Ch
symmetry Space Group: P 31 2 1
R_factor 0.171 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.243 98.243 66.909 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.42 Å
ligand CIT, GOL, UNX enzyme
note 3PP2 is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (3pp2.pdb1.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 3PP2
  • CSU: Contacts of Structural Units for 3PP2
  • Structure Factors (972 Kb)
  • Retrieve 3PP2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PP2 from S2C, [Save to disk]
  • Re-refined 3pp2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PP2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PP2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3PP2, from MSDmotif at EBI
  • Fold representative 3pp2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pp2] [3pp2_A] [3pp2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PP2: [PH ] by SMART
  • Other resources with information on 3PP2
  • Community annotation for 3PP2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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