3QCG Hydrolase Hydrolase Inhibitor date Jan 16, 2011
title Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1, Complex With 3-[(3-Bromo-4-Chlorobenzyl)Sulfanyl]Thiophene- Carboxylic Acid
authors S.Sheriff
compound source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase Gamma
Chain: A
Synonym: Protein-Tyrosine Phosphatase Gamma, R-Ptp-Gamma
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptpg, Ptprg
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 32 2 1
R_factor 0.217 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.500 75.500 152.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.05 Å
ligand ACY, NX1 enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSmall molecule receptor protein tyrosine phosphatase gamma (RPTPgamma) ligands that inhibit phosphatase activity via perturbation of the tryptophan-proline-aspartate (WPD) loop., Sheriff S, Beno BR, Zhai W, Kostich WA, McDonnell PA, Kish K, Goldfarb V, Gao M, Kiefer SE, Yanchunas J, Huang Y, Shi S, Zhu S, Dzierba C, Bronson J, Macor JE, Appiah KK, Westphal RS, O'Connell J, Gerritz SW, J Med Chem. 2011 Oct 13;54(19):6548-62. Epub 2011 Sep 20. PMID:21882820
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (3qcg.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3QCG
  • CSU: Contacts of Structural Units for 3QCG
  • Structure Factors (235 Kb)
  • Retrieve 3QCG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QCG from S2C, [Save to disk]
  • Re-refined 3qcg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QCG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QCG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QCG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qcg] [3qcg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QCG: [PTPc ] by SMART
  • Other resources with information on 3QCG
  • Community annotation for 3QCG at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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