3QF9 Transferase Transferase Inhibitor date Jan 21, 2011
title Crystal Structure Of Human Proto-Oncogene Serine Threonine K (Pim1) In Complex With A Consensus Peptide And A Furan- Thiazolidinedione Ligand
authors P.Filippakopoulos, A.N.Bullock, O.Fedorov, C.V.Miduturu, F.Von D C.H.Arrowsmith, J.Weigelt, A.Edwards, C.Bountra, N.Grey, S.Knapp Structural Genomics Consortium (Sgc)
compound source
Molecule: Proto-Oncogene Serinethreonine-Protein Kinase Pi
Chain: A
Fragment: Unp Residues 92-403
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pim1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4

Molecule: Pimtide
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_common: Synthetic
Organism_taxid: 32630
symmetry Space Group: P 65
R_factor 0.186 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.843 97.843 80.428 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand CL, NA, NM8 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (3qf9.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 3QF9
  • CSU: Contacts of Structural Units for 3QF9
  • Structure Factors (341 Kb)
  • Retrieve 3QF9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QF9 from S2C, [Save to disk]
  • Re-refined 3qf9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QF9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QF9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QF9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qf9] [3qf9_A] [3qf9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QF9: [S_TKc ] by SMART
  • Other resources with information on 3QF9
  • Community annotation for 3QF9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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