3QVE Transcription date Feb 25, 2011
title Crystal Structure Of Human Hmg Box-Containing Protein 1, Hbp
authors A.Chaikuad, E.Krysztofinska, R.Cocking, M.Vollmar, W.W.Yue, T.Kro E.Ugochukwu, P.Filippakopoulos, F.Von Delft, C.H.Arrowsmith, J. A.M.Edwards, C.Bountra, U.Oppermann, Structural Genomics Conso Structural Genomics Consortium (Sgc)
compound source
Molecule: Hmg Box-Containing Protein 1
Chain: A, B, C
Fragment: Axh Domain Residues 206-342
Synonym: Hmg Box Transcription Factor 1, High Mobility Grou Transcription Factor 1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hbp1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 31 2 1
R_factor 0.162 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.840 118.840 93.190 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.04 Å
ligand EDO, SO4 enzyme
note 3QVE is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (3qve.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (3qve.pdb2.gz) 47 Kb
  • Biological Unit Coordinates (3qve.pdb3.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3QVE
  • CSU: Contacts of Structural Units for 3QVE
  • Structure Factors (720 Kb)
  • Retrieve 3QVE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QVE from S2C, [Save to disk]
  • Re-refined 3qve structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3QVE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3QVE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QVE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qve_A] [3qve] [3qve_B] [3qve_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QVE: [AXH ] by SMART
    • Other resources with information on 3QVE
  • Community annotation for 3QVE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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