3R29 Transcription date Mar 14, 2011
title Crystal Structure Of Rxralpha Ligand-Binding Domain Complexe Corepressor Smrt2
authors H.Zhang, L.Chen, J.Chen, H.Jiang, X.Shen
compound source
Molecule: Retinoic Acid Receptor Rxr-Alpha
Chain: A, B
Fragment: Ligand Binding Domain (Unp Residues 223-462)
Synonym: Retinoid X Receptor Alpha, Nuclear Receptor Subfam Group B Member 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rxra, Nr2b1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Receptor Corepressor 2
Chain: C, D
Fragment: Unp Residues 2346-2361
Synonym: Smrt, N-Cor2, Ctg Repeat Protein 26, Smap270, Sile Mediator Of Retinoic Acid And Thyroid Hormone Receptor, T3 Associating Factor, Trac, Thyroid-Receptor-Associated Corep Retinoic-Acid-Receptor-Associated Corepressor;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 41 21 2
R_factor 0.240 R_Free 0.326
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.220 118.220 84.020 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for retinoic X receptor repression on the tetramer., Zhang H, Chen L, Chen J, Jiang H, Shen X, J Biol Chem. 2011 May 24. PMID:21613212
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (3r29.pdb1.gz) 142 Kb
  • CSU: Contacts of Structural Units for 3R29
  • Structure Factors (113 Kb)
  • Retrieve 3R29 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3R29 from S2C, [Save to disk]
  • Re-refined 3r29 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3R29 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3R29
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3R29, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3r29_B] [3r29] [3r29_A] [3r29_C] [3r29_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3R29: [HOLI ] by SMART
  • Other resources with information on 3R29
  • Community annotation for 3R29 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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