3RIP Structural Protein date Apr 14, 2011
title Crystal Structure Of Human Gamma-Tubulin Complex Protein 4 (
authors L.Gregory-Pauron, V.Guillet, L.Mourey
compound source
Molecule: Gamma-Tubulin Complex Component 4
Chain: A
Synonym: Gcp-4, Hgcp4, Gamma-Ring Complex Protein 76 Kda, H Hgrip76;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tubgcp4, 76p, Gcp4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet26b (+)
symmetry Space Group: P 63 2 2
R_factor 0.227 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
214.950 214.950 128.660 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand GOL, MRD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of gamma-tubulin complex protein GCP4 provides insight into microtubule nucleation., Guillet V, Knibiehler M, Gregory-Pauron L, Remy MH, Chemin C, Raynaud-Messina B, Bon C, Kollman JM, Agard DA, Merdes A, Mourey L, Nat Struct Mol Biol. 2011 Jul 3;18(8):915-9. doi: 10.1038/nsmb.2083. PMID:21725292
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (3rip.pdb1.gz) 98 Kb
  • Biological Unit Coordinates (3rip.pdb2.gz) 193 Kb
  • LPC: Ligand-Protein Contacts for 3RIP
  • CSU: Contacts of Structural Units for 3RIP
  • Structure Factors (699 Kb)
  • Retrieve 3RIP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RIP from S2C, [Save to disk]
  • Re-refined 3rip structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RIP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RIP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RIP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rip_A] [3rip]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RIP
  • Community annotation for 3RIP at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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