3RUB Lyase(Carbon-Carbon) date May 25, 1990
title Crystal Structure Of The Unactivated Form Of Ribulose-1,5-Bi Carboxylase(Slash)Oxygenase From Tobacco Refined At 2.0-Ang Resolution
authors H.Schreuder, D.Cascio, P.M.G.Curmi, M.S.Chapman, S.W.Suh, D.S.Eis
compound source
Molecule: Ribulose 1,5-Bisphosphate Carboxylaseoxygenase,
Chain: L
Ec: 4.1.1.39
Engineered: Yes
Organism_scientific: Nicotiana Tabacum
Organism_common: Tobacco
Organism_taxid: 4097

Molecule: Ribulose 1,5-Bisphosphate Carboxylaseoxygenase,
Chain: S
Ec: 4.1.1.39
Engineered: Yes

symmetry Space Group: I 4 2 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.700 148.700 137.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ASN, SO4 enzyme Lyase E.C.4.1.1.39 BRENDA
related structures by homologous chain: 1IR1, 1IR2, 1RXO, 1UW9
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceCrystal structure of the unactivated form of ribulose-1,5-bisphosphate carboxylase/oxygenase from tobacco refined at 2.0-A resolution., Curmi PM, Cascio D, Sweet RM, Eisenberg D, Schreuder H, J Biol Chem 1992 Aug 25;267(24):16980-9. PMID:1512238
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (3rub.pdb1.gz) 751 Kb
  • LPC: Ligand-Protein Contacts for 3RUB
  • CSU: Contacts of Structural Units for 3RUB
  • Likely Quarternary Molecular Structure file(s) for 3RUB
  • Retrieve 3RUB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RUB from S2C, [Save to disk]
  • View 3RUB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RUB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3RUB, from MSDmotif at EBI
  • Genome occurence of 3RUB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3rubl1, region L:148-467 [Jmol] [rasmolscript] [script source]
        - Domain d3rubl2, region L:22-147 [Jmol] [rasmolscript] [script source]
        - Domain d3rubs_, region S [Jmol] [rasmolscript] [script source]
  • Fold representative 3rub from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rub_S] [3rub_L] [3rub]
  • SWISS-PROT database: [P00876] [P69249]
  • Domain organization of [RBL_TOBAC] [RBS_TOBAC] by SWISSPFAM
  • Domain found in 3RUB: [RuBisCO_small ] by SMART
  • Other resources with information on 3RUB
  • Community annotation for 3RUB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 3RUB from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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