3S8Z Signaling Protein date May 31, 2011
title Crystal Structure Of Lrp6-E3e4
authors Z.Cheng, W.Xu
compound source
Molecule: Low-Density Lipoprotein Receptor-Related Protein
Chain: A
Fragment: E3e4, Residues 629-1243
Synonym: Lrp-6
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lrp6
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.257 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.600 83.750 166.620 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand NAG enzyme
Primary referenceCrystal structures of the extracellular domain of LRP6 and its complex with DKK1., Cheng Z, Biechele T, Wei Z, Morrone S, Moon RT, Wang L, Xu W, Nat Struct Mol Biol. 2011 Oct 9. doi: 10.1038/nsmb.2139. PMID:21984209
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (208 Kb) [Save to disk]
  • Biological Unit Coordinates (3s8z.pdb1.gz) 202 Kb
  • LPC: Ligand-Protein Contacts for 3S8Z
  • CSU: Contacts of Structural Units for 3S8Z
  • Structure Factors (426 Kb)
  • Retrieve 3S8Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S8Z from S2C, [Save to disk]
  • Re-refined 3s8z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3S8Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3S8Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3S8Z, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s8z_A] [3s8z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3S8Z: [EGF] [EGF_like] [LY ] by SMART
    • Other resources with information on 3S8Z
  • Community annotation for 3S8Z at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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