3SE4 Immune System Receptor date Jun 10, 2011
title Human Ifnw-Ifnar Ternary Complex
authors C.Thomas, K.C.Garcia
compound source
Molecule: Interferon Alphabeta Receptor 1
Chain: A
Fragment: Ifnw (Unp Residues 28-436)
Synonym: Ifn-R-1, Ifn-Alphabeta Receptor 1, Cytokine Recep II Member 1, Cytokine Receptor Family 2 Member 1, Crf2-1, T Interferon Receptor 1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifnar1, Ifnar
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Interferon Omega-1
Chain: B
Fragment: Unp Residues 22-195
Synonym: Interferon Alpha-II-1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifnw1
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Interferon Alphabeta Receptor 2
Chain: C
Fragment: Unp Residues 34-232
Synonym: Ifn-R-2, Ifn-Alpha Binding Protein, Ifn-Alphabeta 2, Interferon Alpha Binding Protein, Type I Interferon Rece
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifnar2, Ifnabr, Ifnarb
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 61 2 2
R_factor 0.213 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.490 93.490 403.130 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.50 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceStructural Linkage between Ligand Discrimination and Receptor Activation by Type I Interferons., Thomas C, Moraga I, Levin D, Krutzik PO, Podoplelova Y, Trejo A, Lee C, Yarden G, Vleck SE, Glenn JS, Nolan GP, Piehler J, Schreiber G, Garcia KC, Cell. 2011 Aug 19;146(4):621-32. PMID:21854986
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk]
  • Biological Unit Coordinates (3se4.pdb1.gz) 200 Kb
  • LPC: Ligand-Protein Contacts for 3SE4
  • CSU: Contacts of Structural Units for 3SE4
  • Structure Factors (119 Kb)
  • Retrieve 3SE4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SE4 from S2C, [Save to disk]
  • Re-refined 3se4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SE4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SE4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SE4, from MSDmotif at EBI
  • Fold representative 3se4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3se4_C] [3se4_B] [3se4_A] [3se4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3SE4: [FN3] [IFabd ] by SMART
  • Other resources with information on 3SE4
  • Community annotation for 3SE4 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science