3SI6	Transferase Dna	date	Jun 17, 2011
title	Rb69 Dna Polymerase Triple Mutant (L561as565gy567a) Ternar With Dupnpp And A Deoxy-Terminated Primer In The Presence O
authors	M.Wang, J.Wang, W.H.Konigsberg
compound		source
Molecule: 5'-D(Tpcpapapgptpapapgpcpapgptpcpc -3'; Chain: T Engineered: Yes Other_details: Template Dna Strand		Synthetic: Yes
Molecule: 5'-D(Gpcpgpgpapcptpgpcptptpapc)-3' Chain: P Engineered: Yes Other_details: Primer Dna Strand		Synthetic: Yes
Molecule: Dna Polymerase Chain: A Synonym: Gp43 Ec: 2.7.7.7 Engineered: Yes Mutation: Yes		Organism_scientific: Enterobacteria Phage Rb69 Organism_taxid: 12353 Gene: 43, Gp43 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet 21b
symmetry	Space Group: P 21 21 21	R_factor 0.183 R_Free 0.217
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.458 120.195 131.205 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	DUP, MG	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A DNA-directed DNA polymerase ... nuclease activity exonuclease activity 3'-5' exonuclease activity
Primary reference	Structural Insights into Complete Metal Ion Coordination from Ternary Complexes of B Family RB69 DNA Polymerase., Xia S, Wang M, Blaha G, Konigsberg WH, Wang J, Biochemistry. 2011 Oct 25;50(42):9114-24. Epub 2011 Sep 29. PMID:21923197

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (346 Kb) [Save to disk] Biological Unit Coordinates (3si6.pdb1.gz) 340 Kb LPC: Ligand-Protein Contacts for 3SI6 CSU: Contacts of Structural Units for 3SI6 Structure Factors (1529 Kb) Retrieve 3SI6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3SI6 from S2C, [Save to disk] Re-refined 3si6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3SI6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3SI6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3SI6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3si6] [3si6_T] [3si6_A] [3si6_P] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3SI6: [POLBc ] by SMART

Other resources with information on 3SI6

Community annotation for 3SI6 at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---