OCA Atlas for 3SJV

3SJV

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
L, B, G, Q		cellular response to iron io...

Primary reference

A structural basis for varied alphabeta TCR usage against an immunodominant EBV antigen restricted to a HLA-B8 molecule., Gras S, Wilmann PG, Chen Z, Halim H, Liu YC, Kjer-Nielsen L, Purcell AW, Burrows SR, McCluskey J, Rossjohn J, J Immunol. 2012 Jan 1;188(1):311-21. Epub 2011 Dec 2. PMID:22140258

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (535 Kb) [Save to disk]

Biological Unit Coordinates (3sjv.pdb1.gz) 137 Kb

Biological Unit Coordinates (3sjv.pdb2.gz) 137 Kb

Biological Unit Coordinates (3sjv.pdb3.gz) 139 Kb

Biological Unit Coordinates (3sjv.pdb4.gz) 139 Kb

CSU: Contacts of Structural Units for 3SJV

Structure Factors (1093 Kb)

Retrieve 3SJV in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3SJV from S2C, [Save to disk]

Re-refined 3sjv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3SJV in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3sjv] [3sjv_A] [3sjv_B] [3sjv_C] [3sjv_D] [3sjv_E] [3sjv_F] [3sjv_G] [3sjv_H] [3sjv_I] [3sjv_J] [3sjv_K] [3sjv_L] [3sjv_M] [3sjv_N] [3sjv_O] [3sjv_P] [3sjv_Q] [3sjv_R] [3sjv_S] [3sjv_T]

SWISS-PROT database:

Domains found in 3SJV: [IG_like] [IGc1] [IGv ] by SMART

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