3SOM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 5AD, B12, DHL, EDO, FLC, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, L, P, H, E, F, O, M, G, B, J, I, C, N, K


Primary referenceStructure of MMACHC reveals an arginine-rich pocket and a domain-swapped dimer for its B12 processing function., Froese DS, Krojer T, Wu X, Shrestha R, Kiyani W, von Delft F, Gravel RA, Oppermann U, Yue WW, Biochemistry. 2012 Jun 26;51(25):5083-90. Epub 2012 Jun 14. PMID:22642810
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (685 Kb) [Save to disk]
  • Biological Unit Coordinates (3som.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (3som.pdb2.gz) 51 Kb
  • Biological Unit Coordinates (3som.pdb3.gz) 51 Kb
  • Biological Unit Coordinates (3som.pdb4.gz) 51 Kb
  • Biological Unit Coordinates (3som.pdb5.gz) 52 Kb
  • Biological Unit Coordinates (3som.pdb6.gz) 52 Kb
  • Biological Unit Coordinates (3som.pdb7.gz) 53 Kb
  • Biological Unit Coordinates (3som.pdb8.gz) 52 Kb
  • Biological Unit Coordinates (3som.pdb9.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 3SOM
  • CSU: Contacts of Structural Units for 3SOM
  • Structure Factors (4894 Kb)
  • Retrieve 3SOM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SOM from S2C, [Save to disk]
  • Re-refined 3som structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3SOM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3som] [3som_A] [3som_B] [3som_C] [3som_D] [3som_E] [3som_F] [3som_G] [3som_H] [3som_I] [3som_J] [3som_K] [3som_L] [3som_M] [3som_N] [3som_O] [3som_P]
  • SWISS-PROT database:

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