3T5K	Dna Transferase	date	Jul 27, 2011
title	Ternary Complex Of Hne Adduct Modified Dna (5'-Txg-3' Vs 14- Dpo4 And Incoming Ddtp
authors	S.Banerjee, P.P.Christov, A.Kozekova, C.J.Rizzo, M.P.Stone
compound		source
Molecule: Dna Polymerase Iv Chain: A Synonym: Pol Iv Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Sulfolobus Solfataricus P2 Organism_taxid: 273057 Strain: Atcc 35092 Dsm 1617 Jcm 11322 P2 Gene: Dbh, Dpo4, Sso2448 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'-D(Cpaptp(Hn0) Pgpapaptpcpcptptpcpcpcpcpc)-3'); Chain: B Engineered: Yes Other_details: Modified Dna Template		Synthetic: Yes Other_details: Synthetic Construct
Molecule: Dna (5'-D(Gpgpgpgpgpapapgpgpaptptpcp Chain: C Engineered: Yes Other_details: Dna Primer		Synthetic: Yes Other_details: Synthetic Construct
symmetry	Space Group: P 21 21 2	R_factor 0.212 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.372 104.011 52.831 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	CA, DTP, HN0	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Replication Bypass of the trans-4-Hydroxynonenal-Derived (6S,8R,11S)-1,N(2)-Deoxyguanosine DNA Adduct by the Sulfolobus solfataricus DNA Polymerase IV., Banerjee S, Christov PP, Kozekova A, Rizzo CJ, Egli M, Stone MP, Chem Res Toxicol. 2012 Feb 7. PMID:22313351

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk] Biological Unit Coordinates (3t5k.pdb1.gz) 71 Kb LPC: Ligand-Protein Contacts for 3T5K CSU: Contacts of Structural Units for 3T5K Structure Factors (107 Kb) Retrieve 3T5K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3T5K from S2C, [Save to disk] Re-refined 3t5k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3T5K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3T5K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3T5K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3t5k_B] [3t5k_A] [3t5k_C] [3t5k] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3T5K

Community annotation for 3T5K at PDBWiki (http://pdbwiki.org)

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