3TGY Oxidoreductase date Aug 18, 2011
title Crystal Structure Of The Complex Of Bovine Lactoperoxidase W Ascorbic Acid At 2.35 A Resolution
authors S.Yamini, R.P.Singh, A.K.Singh, N.Pandey, M.Sinha, P.Kaur, S.Sharm T.P.Singh
compound source
Molecule: Lactoperoxidase
Chain: A
Fragment: Unp Residues 118-712
Synonym: Lpo
Ec: 1.11.1.7
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 1 21 1
R_factor 0.226 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.706 79.614 65.785 90.00 93.23 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand ASC, CA, EDO, GOL, HEM, IOD, MPD, NAG, PEG, SCN, SEP enzyme Oxidoreductase E.C.1.11.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (3tgy.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 3TGY
  • CSU: Contacts of Structural Units for 3TGY
  • Structure Factors (463 Kb)
  • Retrieve 3TGY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TGY from S2C, [Save to disk]
  • Re-refined 3tgy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3TGY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3TGY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TGY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tgy] [3tgy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3TGY
  • Community annotation for 3TGY at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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