3TJV	Hydrolase	date	Aug 25, 2011
title	Crystal Structure Of Human Granzyme H With A Peptidyl Substr
authors	L.Wang, K.Zhang, L.Wu, L.Tong, F.Sun, Z.Fan
compound		source
Molecule: Granzyme H Chain: A Synonym: Gzmh, Ccp-X, Cathepsin G-Like 2, Ctsgl2, Cytotoxic Lymphocyte Proteinase, Cytotoxic Serine Protease C, Csp-C; Ec: 3.4.21.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gzmh, Cgl2, Ctsgl2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosseta(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-28a
Molecule: Ptsyagddsg Chain: B Engineered: Yes		Synthetic: Yes Other_details: This Sequence Is A Synthetic Construct.
symmetry	Space Group: P 41 21 2	R_factor 0.234 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.848 57.848 142.771 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	SO4	enzyme	Hydrolase E.C.3.4.21 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural Insights into the Substrate Specificity of Human Granzyme H: The Functional Roles of a Novel RKR Motif., Wang L, Zhang K, Wu L, Liu S, Zhang H, Zhou Q, Tong L, Sun F, Fan Z, J Immunol. 2011 Dec 9. PMID:22156497

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (3tjv.pdb1.gz) 37 Kb LPC: Ligand-Protein Contacts for 3TJV CSU: Contacts of Structural Units for 3TJV Structure Factors (75 Kb) Retrieve 3TJV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3TJV from S2C, [Save to disk] Re-refined 3tjv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3TJV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3TJV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3TJV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3tjv_A] [3tjv] [3tjv_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3TJV: [Tryp_SPc ] by SMART

Other resources with information on 3TJV

Community annotation for 3TJV at PDBWiki (http://pdbwiki.org)

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