3TMH Transport Protein Signaling Protein date Aug 31, 2011
title Crystal Structure Of Dual-Specific A-Kinase Anchoring Protei Complex With Camp-Dependent Protein Kinase A Type II Alpha
authors G.N.Sarma, R.H.Phan, B.Sankaran, S.S.Taylor
compound source
Molecule: Na(+)H(+) Exchange Regulatory Cofactor Nhe-Rf3
Chain: A, E, I
Fragment: Unp Residues 375-459
Synonym: Nherf-3, Cftr-Associated Protein Of 70 Kda, Na(+) Exchanger Regulatory Factor 3, Napi Cotransporter C-Termin Associated Protein 1, Napi-Cap1, Pdz Domain-Containing Prot Sodium-Hydrogen Exchanger Regulatory Factor 3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdzk1, Cap70, Nherf3, Pdzd1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Camp-Dependent Protein Kinase Type II-Alpha Regul Subunit;
Chain: B, C, F, G
Fragment: Dimerizationdocking Domain (Dd), Unp Residues 3
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Brown Rat,Rat,Rats
Organism_taxid: 10116
Gene: Prkar2a
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: A-Kinase Anchor Protein 10, Mitochondrial
Chain: D, H, L
Fragment: A-Kinase Binding Domain (Akb), Unp Residues 623-6
Synonym: Akap-10, Dual Specificity A Kinase-Anchoring Prote Akap-2, Protein Kinase A-Anchoring Protein 10, Prka10;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Akap10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.268 R_Free 0.328
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.472 121.472 88.282 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.80 Å
Gene
Ontology
ChainFunctionProcessComponent
H, D, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (3tmh.pdb1.gz) 310 Kb
  • CSU: Contacts of Structural Units for 3TMH
  • Structure Factors (45 Kb)
  • Retrieve 3TMH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TMH from S2C, [Save to disk]
  • Re-refined 3tmh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TMH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TMH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3TMH, from MSDmotif at EBI
  • Fold representative 3tmh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tmh_C] [3tmh_G] [3tmh_E] [3tmh_I] [3tmh_D] [3tmh_F] [3tmh] [3tmh_B] [3tmh_L] [3tmh_H] [3tmh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3TMH: [PDZ] [RIIa ] by SMART
  • Other resources with information on 3TMH
  • Community annotation for 3TMH at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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