3TSH Allergen, Oxidoreductase date Sep 13, 2011
title Crystal Structure Of Phl P 4, A Grass Pollen Allergen With G Dehydrogenase Activity
authors D.Zafred, A.Nandy, W.Keller
compound source
Molecule: Pollen Allergen Phl P 4
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Phleum Pratense
Organism_common: Timothy
Organism_taxid: 15957
Gene: Phlp4
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_vector_type: Aox1-Promoter Containing Vec Vector
symmetry Space Group: P 61 2 2
R_factor 0.162 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.077 117.077 202.090 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand FDA, FMT, MLI, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (3tsh.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 3TSH
  • CSU: Contacts of Structural Units for 3TSH
  • Structure Factors (956 Kb)
  • Retrieve 3TSH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TSH from S2C, [Save to disk]
  • Re-refined 3tsh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3TSH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3TSH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TSH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tsh] [3tsh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3TSH
  • Community annotation for 3TSH at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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