3U6Z Hydrolase date Oct 13, 2011
title Crystal Structure Of The Complex Formed Between Type 1 Ribos Inactivating Protein And Adenine At 1.7a Resolution
authors N.Pandey, G.S.Kushwaha, M.Sinha, A.Bhushan, P.Kaur, S.Sharma, T.P.
compound source
Molecule: Ribosome Inactivating Protein
Chain: A
Ec: 3.2.2.22
 Organism_scientific: Momordica Balsamina
Organism_common: Bitter Gourd
Organism_taxid: 3672
symmetry Space Group: H 3
R_factor 0.175 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.207 130.207 39.831 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand ADE, GOL, NAG enzyme Hydrolase E.C.3.2.2.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


    • Primary referenceCrystal structures of a type-1 ribosome inactivating protein from Momordica balsamina in the bound and unbound states., Kushwaha GS, Pandey N, Sinha M, Singh SB, Kaur P, Sharma S, Singh TP, Biochim Biophys Acta. 2012 Apr;1824(4):679-91. Epub 2012 Feb 14. PMID:22361570
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (3u6z.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 3U6Z
  • CSU: Contacts of Structural Units for 3U6Z
  • Structure Factors (502 Kb)
  • Retrieve 3U6Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U6Z from S2C, [Save to disk]
  • Re-refined 3u6z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3U6Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3U6Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3U6Z, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u6z_A] [3u6z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3U6Z
  • Community annotation for 3U6Z at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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