3UF2 Cytokine date Oct 31, 2011
title Crystal Structure Of The Human Colony-Stimulating Factor 1 ( Cytokine
authors J.Elegheert, S.N.Savvides
compound source
Molecule: Macrophage Colony-Stimulating Factor 1
Chain: A, B, C, D, E, F, G, H, I, J
Fragment: Unp Residues 33-181
Synonym: Csf-1, M-Csf, Mcsf, Lanimostim, Processed Macropha Stimulating Factor 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csf1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Codonplus Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1 21 1
R_factor 0.137 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.150 104.490 116.240 90.00 105.29 90.00
method X-Ray Diffractionresolution 2.75 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, E, B, H, C, D, I, G


Primary referenceAllosteric competitive inactivation of hematopoietic CSF-1 signaling by the viral decoy receptor BARF1., Elegheert J, Bracke N, Pouliot P, Gutsche I, Shkumatov AV, Tarbouriech N, Verstraete K, Bekaert A, Burmeister WP, Svergun DI, Lambrecht BN, Vergauwen B, Savvides SN, Nat Struct Mol Biol. 2012 Sep;19(9):938-47. doi: 10.1038/nsmb.2367. Epub 2012 Aug, 19. PMID:22902366
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk]
  • Biological Unit Coordinates (3uf2.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (3uf2.pdb2.gz) 50 Kb
  • Biological Unit Coordinates (3uf2.pdb3.gz) 50 Kb
  • Biological Unit Coordinates (3uf2.pdb4.gz) 50 Kb
  • Biological Unit Coordinates (3uf2.pdb5.gz) 49 Kb
  • CSU: Contacts of Structural Units for 3UF2
  • Structure Factors (296 Kb)
  • Retrieve 3UF2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UF2 from S2C, [Save to disk]
  • Re-refined 3uf2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UF2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UF2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3UF2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1q3uf2, region F:130-341 [Jmol] [rasmolscript] [script source]
  • Fold representative 3uf2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uf2_J] [3uf2_B] [3uf2_I] [3uf2_D] [3uf2_F] [3uf2_E] [3uf2_H] [3uf2_C] [3uf2_G] [3uf2_A] [3uf2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3UF2
  • Community annotation for 3UF2 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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