3UFJ Human Thymine DNA Glycosylase Bound to Substrate Analog 2'-fluoro-2'-deoxyuridine date 2011-11-01
authors Pozharski, E., Maiti, A., Drohat, A.C.
compound source
R_Free 0.30435
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.97
ligand UF2 enzyme
A, B

Primary referenceLesion processing by a repair enzyme is severely curtailed by residues needed to prevent aberrant activity on undamaged DNA., Maiti A, Noon MS, Mackerell AD Jr, Pozharski E, Drohat AC, Proc Natl Acad Sci U S A. 2012 May 9. PMID:22573813
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (3ufj.pdb1.gz) 74 Kb
  • Biological Unit Coordinates (3ufj.pdb2.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 3UFJ
  • CSU: Contacts of Structural Units for 3UFJ
  • Structure Factors (127 Kb)
  • Retrieve 3UFJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UFJ from S2C, [Save to disk]
  • Re-refined 3ufj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UFJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UFJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3UFJ, from MSDmotif at EBI
  • Fold representative 3ufj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ufj_A] [3ufj] [3ufj_F] [3ufj_B] [3ufj_D] [3ufj_E] [3ufj_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3UFJ: [UDG] [UreE_C ] by SMART
  • Other resources with information on 3UFJ
  • Community annotation for 3UFJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science