3UO8 Hydrolase Hydrolase Inhibitor date Nov 16, 2011
title Crystal Structure Of The Malt1 Paracaspase (P1 Form)
authors P.D.Jeffrey, J.W.Yu, Y.Shi
compound source
Molecule: Mucosa-Associated Lymphoid Tissue Lymphoma Transl Protein 1;
Chain: B, C
Fragment: Unp Residues 339-719
Synonym: Malt Lymphoma-Associated Translocation, Paracaspas
Ec: 3.4.22.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Malt1, Mlt
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Z-Val-Arg-Pro-Dl-Arg-Fluoromethylketone
Chain: L, M
Synonym: Malt1 Inhibitor, Z-Vrpr-Fmk
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized.
symmetry Space Group: P 1
R_factor 0.207 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.235 61.158 71.126 108.59 97.23 117.23
method X-Ray Diffractionresolution 1.90 Å
ligand
enzyme Hydrolase E.C.3.4.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
C, B


Primary referenceCrystal structure of the mucosa-associated lymphoid tissue lymphoma translocation 1 (MALT1) paracaspase region., Yu JW, Jeffrey PD, Ha JY, Yang X, Shi Y, Proc Natl Acad Sci U S A. 2011 Dec 27;108(52):21004-9. Epub 2011 Dec 7. PMID:22158899
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (367 Kb) [Save to disk]
  • Biological Unit Coordinates (3uo8.pdb1.gz) 183 Kb
  • Biological Unit Coordinates (3uo8.pdb2.gz) 181 Kb
  • CSU: Contacts of Structural Units for 3UO8
  • Structure Factors (447 Kb)
  • Retrieve 3UO8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UO8 from S2C, [Save to disk]
  • Re-refined 3uo8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UO8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UO8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3UO8, from MSDmotif at EBI
  • Fold representative 3uo8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uo8_B] [3uo8_L] [3uo8] [3uo8_M] [3uo8_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UO8: [CASc ] by SMART
  • Other resources with information on 3UO8
  • Community annotation for 3UO8 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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