3UP0	Steroid Binding Protein Transcription	date	Nov 17, 2011
title	Nuclear Receptor Daf-12 From Hookworm Ancylostoma Ceylanicum Complex With (25s)-Delta7-Dafachronic Acid
authors	X.Zhi, X.E.Zhou, K.Melcher, D.L.Motola, V.Gelmedin, J.Hawdon, S.A. D.J.Mangelsdorf, H.E.Xu
compound		source
Molecule: Acedaf-12 Chain: A, B Fragment: Ligand Binding Domain Engineered: Yes Mutation: Yes		Organism_scientific: Ancylostoma Ceylanicum Organism_taxid: 53326 Gene: Daf-12 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Psumo
Molecule: Nuclear Receptor Coactivator 2 Chain: P, Q Fragment: Nuclear Receptor Binding Motif (Unp Residues 740- Synonym: Src2, Steroid Receptor Coactivator-2, Ncoa-2, Clas Helix-Loop-Helix Protein 75, Bhlhe75, Transcriptional Inter Factor 2, Htif2; Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Src2
symmetry	Space Group: P 1 21 1	R_factor 0.183 R_Free 0.202
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.012 85.163 66.127 90.00 107.10 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	D7S	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural conservation of ligand binding reveals a bile acid-like signaling pathway in nematodes., Zhi X, Zhou XE, Melcher K, Motola DL, Gelmedin V, Hawdon J, Kliewer SA, Mangelsdorf DJ, Xu HE, J Biol Chem. 2011 Dec 21. PMID:22170062

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk] Biological Unit Coordinates (3up0.pdb1.gz) 48 Kb Biological Unit Coordinates (3up0.pdb2.gz) 48 Kb LPC: Ligand-Protein Contacts for 3UP0 CSU: Contacts of Structural Units for 3UP0 Structure Factors (1350 Kb) Retrieve 3UP0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3UP0 from S2C, [Save to disk] Re-refined 3up0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3UP0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3UP0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3UP0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3up0_B] [3up0_Q] [3up0] [3up0_P] [3up0_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3UP0: [HOLI ] by SMART

Other resources with information on 3UP0

Community annotation for 3UP0 at PDBWiki (http://pdbwiki.org)

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