3UPX	Transferase Transferase Inhibitor	date	Nov 18, 2011
title	Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (T Complex With Inhibitor Uw1300
authors	E.A.Merritt, E.T.Larson
compound		source
Molecule: Calmodulin-Domain Protein Kinase 1 Chain: A Synonym: Calmodulin-Domain Protein Kinase, Putative Ec: 2.7.11.17 Engineered: Yes		Organism_scientific: Toxoplasma Gondii Organism_taxid: 5811 Gene: Aag53993, Cdpk1, Tggt1_059880, Tgveg_042030 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ava0421
symmetry	Space Group: P 1 21 1	R_factor 0.204 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.290 72.930 66.920 90.00 101.02 90.00
method	X-Ray Diffraction	resolution	2.27 Å
ligand	B6A BindingDB	enzyme	Transferase E.C.2.7.11.17 BRENDA
Gene	TGGT1 ; TGVEG
Gene Ontology	Chain Function Process Component A
Primary reference	Multiple determinants for selective inhibition of apicomplexan calcium-dependent protein kinase CDPK1., Larson ET, Ojo KK, Murphy RC, Johnson SM, Zhang Z, Kim JE, Leibly DJ, Fox AM, Reid MC, Dale EJ, Perera BG, Kim J, Hewitt SN, Hol WG, Verlinde CL, Fan E, Van Voorhis WC, Maly DJ, Merritt EA, J Med Chem. 2012 Feb 27. PMID:22369268

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk] Biological Unit Coordinates (3upx.pdb1.gz) 146 Kb LPC: Ligand-Protein Contacts for 3UPX CSU: Contacts of Structural Units for 3UPX Structure Factors (549 Kb) Retrieve 3UPX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3UPX from S2C, [Save to disk] Re-refined 3upx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3UPX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3UPX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3UPX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3upx] [3upx_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3UPX: [EFh] [S_TKc ] by SMART

Other resources with information on 3UPX

Community annotation for 3UPX at PDBWiki (http://pdbwiki.org)

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