OCA Atlas for 3UXM

3UXM

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

0DN, MG

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, A, B, D	thymidylate kinase activity uridylate kinase activity

Primary reference

Structure Guided Development of Novel Thymidine Mimetics Targeting Pseudomonas aeruginosa Thymidylate Kinase: From Hit to Lead Generation., Choi JY, Plummer MS, Starr J, Desbonnet CR, Soutter H, Chang J, Miller JR, Dillman K, Miller AA, Roush WR, J Med Chem. 2012 Jan 26;55(2):852-70. Epub 2012 Jan 13. PMID:22243413

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]

Biological Unit Coordinates (3uxm.pdb1.gz) 35 Kb

Biological Unit Coordinates (3uxm.pdb2.gz) 35 Kb

Biological Unit Coordinates (3uxm.pdb3.gz) 35 Kb

Biological Unit Coordinates (3uxm.pdb4.gz) 35 Kb

Biological Unit Coordinates (3uxm.pdb5.gz) 67 Kb

Biological Unit Coordinates (3uxm.pdb6.gz) 67 Kb

LPC: Ligand-Protein Contacts for 3UXM

CSU: Contacts of Structural Units for 3UXM

Structure Factors (385 Kb)

Retrieve 3UXM in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3UXM from S2C, [Save to disk]

Re-refined 3uxm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3UXM in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3uxm] [3uxm_A] [3uxm_B] [3uxm_C] [3uxm_D]

SWISS-PROT database:

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