3V3E Transcription date Dec 13, 2011
title Crystal Structure Of The Human Nur77 Ligand-Binding Domain
authors Q.Zhang, C.Shi, K.Yang, Y.Chen, Y.Zhan, Q.Wu, T.Lin
compound source
Molecule: Nuclear Receptor Subfamily 4 Group A Member 1
Chain: B, A
Fragment: Unp Residues 351-598
Synonym: Orphan Nuclear Receptor Nr4a1, Early Response Prot Nuclear Hormone Receptor Nur77, Nur77, Orphan Nuclear Rece Orphan Nuclear Receptor Tr3, St-59, Testicular Receptor 3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr4a1, Gfrp1, Hmr, Nak1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 21 21 21
R_factor 0.195 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.430 76.773 128.953 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.06 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe orphan nuclear receptor Nur77 regulates LKB1 localization and activates AMPK., Zhan YY, Chen Y, Zhang Q, Zhuang JJ, Tian M, Chen HZ, Zhang LR, Zhang HK, He JP, Wang WJ, Wu R, Wang Y, Shi C, Yang K, Li AZ, Xin YZ, Li TY, Yang JY, Zheng ZH, Yu CD, Lin SC, Chang C, Huang PQ, Lin T, Wu Q, Nat Chem Biol. 2012 Nov;8(11):897-904. doi: 10.1038/nchembio.1069. Epub 2012 Sep , 16. PMID:22983157
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (3v3e.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 3V3E
  • CSU: Contacts of Structural Units for 3V3E
  • Structure Factors (532 Kb)
  • Retrieve 3V3E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V3E from S2C, [Save to disk]
  • Re-refined 3v3e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V3E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V3E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3V3E, from MSDmotif at EBI
  • Fold representative 3v3e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v3e_B] [3v3e] [3v3e_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3V3E: [HOLI ] by SMART
  • Other resources with information on 3V3E
  • Community annotation for 3V3E at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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