3V3K Hydrolase date Dec 13, 2011
title Human Caspase 9 In Complex With Bacterial Effector Protein
authors M.Moertl, K.Maskos, H.Steuber
compound source
Molecule: Caspase-9
Chain: A, C, E, G, I, K, M, O
Fragment: Unp Residues 141-416
Synonym: Casp-9, Apoptotic Protease Mch-6, Apoptotic Protea Activating Factor 3, Apaf-3, Ice-Like Apoptotic Protease 6, Caspase-9 Subunit P35, Caspase-9 Subunit P10;
Ec: 3.4.22.62
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Casp9, Mch6
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Putative Uncharacterized Protein Ecs1815
Chain: B, D, F, H, J, L, N, P
Fragment: Unp Residues 25-189
Engineered: Yes

Organism_scientific: Escherichia Coli O157:H7
Organism_taxid: 83334
Gene: Ecs1815, Z6020
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.239 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.703 209.906 317.231 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.49 Å
ligand
enzyme Hydrolase E.C.3.4.22.62 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, O, M, C, K, I, G, E


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (520 Kb) [Save to disk]
  • Biological Unit Coordinates (3v3k.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (3v3k.pdb2.gz) 68 Kb
  • Biological Unit Coordinates (3v3k.pdb3.gz) 69 Kb
  • Biological Unit Coordinates (3v3k.pdb4.gz) 68 Kb
  • Biological Unit Coordinates (3v3k.pdb5.gz) 69 Kb
  • Biological Unit Coordinates (3v3k.pdb6.gz) 67 Kb
  • Biological Unit Coordinates (3v3k.pdb7.gz) 70 Kb
  • Biological Unit Coordinates (3v3k.pdb8.gz) 68 Kb
  • CSU: Contacts of Structural Units for 3V3K
  • Structure Factors (685 Kb)
  • Retrieve 3V3K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V3K from S2C, [Save to disk]
  • Re-refined 3v3k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V3K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V3K
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3V3K, from MSDmotif at EBI
  • Fold representative 3v3k from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v3k_O] [3v3k_M] [3v3k_P] [3v3k_D] [3v3k] [3v3k_N] [3v3k_F] [3v3k_J] [3v3k_A] [3v3k_G] [3v3k_L] [3v3k_K] [3v3k_H] [3v3k_C] [3v3k_I] [3v3k_E] [3v3k_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3V3K: [CASc ] by SMART
  • Other resources with information on 3V3K
  • Community annotation for 3V3K at PDBWiki (http://pdbwiki.org)

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