3V47	Immune System	date	Dec 14, 2011
title	Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tl Complex With Salmonella Flagellin
authors	S.I.Yoon, H.Hong, I.A.Wilson
compound		source
Molecule: Toll-Like Receptor 5b And Variable Lymphocyte Rec Chimeric Protein; Chain: A, B Fragment: Zebrafish Toll-Like Receptor 5b (Unp Residues 22- Hagfish Variable Lymphocyte Receptor B.61 (Unp Residues 126 Engineered: Yes Mutation: Yes		Organism_scientific: Danio Rerio, Eptatretus Burgeri Organism_common: Zebra Fish, Inshore Hagfish Organism_taxid: 7955, 7764 Expression_system: Trichoplusia Ni Expression_system_taxid: 7111 Expression_system_cell_line: Hi5
Molecule: Flagellin Chain: C, D Fragment: Unp Residues 48-466 Synonym: Phase 1-C Flagellin Engineered: Yes		Organism_scientific: Salmonella Enterica Subsp. Enterica Se Dublin; Organism_taxid: 98360 Gene: Flic, Flic1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.221 R_Free 0.259
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.406 181.495 186.367 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.47 Å
ligand	NAG	enzyme
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Structural basis of TLR5-flagellin recognition and signaling., Yoon SI, Kurnasov O, Natarajan V, Hong M, Gudkov AV, Osterman AL, Wilson IA, Science. 2012 Feb 17;335(6070):859-64. PMID:22344444

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (466 Kb) [Save to disk] Biological Unit Coordinates (3v47.pdb1.gz) 455 Kb LPC: Ligand-Protein Contacts for 3V47 CSU: Contacts of Structural Units for 3V47 Structure Factors (930 Kb) Retrieve 3V47 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3V47 from S2C, [Save to disk] Re-refined 3v47 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3V47, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3v47_A] [3v47] [3v47_B] [3v47_C] [3v47_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3V47: [LRR] [LRRCT] [LRR_TYP ] by SMART

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