3V9E Oxidoreductase date Dec 27, 2011
title Structure Of The L499m Mutant Of The Laccase From B.Aclada
authors E.M.Osipov, K.M.Polyakov, T.V.Tikhonova, P.V.Dorovatovsky, R.Lud R.Kittl, S.V.Shleev, V.O.Popov
compound source
Molecule: Laccase
Chain: A
Ec: 1.10.3.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Botrytis Aclada
Organism_taxid: 139639
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
symmetry Space Group: C 1 2 1
R_factor 0.163 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.710 113.560 79.980 90.00 108.74 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand BMA, CU, GOL, MAN, NAG enzyme Oxidoreductase E.C.1.10.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEffect of the L499M mutation of the ascomycetous Botrytis aclada laccase on redox potential and catalytic properties., Osipov E, Polyakov K, Kittl R, Shleev S, Dorovatovsky P, Tikhonova T, Hann S, Ludwig R, Popov V, Acta Crystallogr D Biol Crystallogr. 2014 Nov;70(Pt 11):2913-23. doi:, 10.1107/S1399004714020380. Epub 2014 Oct 23. PMID:25372682
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (3v9e.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 3V9E
  • CSU: Contacts of Structural Units for 3V9E
  • Structure Factors (1131 Kb)
  • Retrieve 3V9E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V9E from S2C, [Save to disk]
  • Re-refined 3v9e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V9E in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V9E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V9E, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v9e] [3v9e_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3V9E
  • Community annotation for 3V9E at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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