3V9H Oxidoreductase date Dec 27, 2011
title Crystal Structure Of Human 1-Pyrroline-5-Carboxylate Dehydro Mutant S352a
authors J.J.Tanner, R.K.Singh
compound source
Molecule: Delta-1-Pyrroline-5-Carboxylate Dehydrogenase, Mitochondrial;
Chain: A, B, C, D
Fragment: Unp Residues 18-563
Synonym: 1-Pyrroline-5-Carboxylate Dehydrogenase, P5c Dehyd Aldehyde Dehydrogenase Family 4 Member A1;
Ec: 1.5.1.12
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aldh4, Aldh4a1, P5cdh
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
symmetry Space Group: P 65
R_factor 0.210 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
149.131 149.131 190.687 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand SO4 enzyme Oxidoreductase E.C.1.5.1.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • electron transfer activity


  • Primary referenceThe Three-Dimensional Structural Basis of Type II Hyperprolinemia., Srivastava D, Singh RK, Moxley MA, Henzl MT, Becker DF, Tanner JJ, J Mol Biol. 2012 Apr 16. PMID:22516612
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (667 Kb) [Save to disk]
  • Biological Unit Coordinates (3v9h.pdb1.gz) 339 Kb
  • Biological Unit Coordinates (3v9h.pdb2.gz) 324 Kb
  • LPC: Ligand-Protein Contacts for 3V9H
  • CSU: Contacts of Structural Units for 3V9H
  • Structure Factors (681 Kb)
  • Retrieve 3V9H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V9H from S2C, [Save to disk]
  • Re-refined 3v9h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V9H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3V9H, from MSDmotif at EBI
  • Fold representative 3v9h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v9h_D] [3v9h_B] [3v9h_C] [3v9h_A] [3v9h]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3V9H
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