3VCD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CL, SO4 enzyme
note 3VCD (Molecule of the Month:pdb165)
Primary referenceComputational design of self-assembling protein nanomaterials with atomic level accuracy., King NP, Sheffler W, Sawaya MR, Vollmar BS, Sumida JP, Andre I, Gonen T, Yeates TO, Baker D, Science. 2012 Jun 1;336(6085):1171-4. PMID:22654060
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (453 Kb) [Save to disk]
  • Biological Unit Coordinates (3vcd.pdb1.gz) 1328 Kb
  • LPC: Ligand-Protein Contacts for 3VCD
  • CSU: Contacts of Structural Units for 3VCD
  • Structure Factors (1961 Kb)
  • Retrieve 3VCD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VCD from S2C, [Save to disk]
  • Re-refined 3vcd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VCD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vcd] [3vcd_A] [3vcd_B] [3vcd_C] [3vcd_D] [3vcd_E] [3vcd_F] [3vcd_G] [3vcd_H]
  • SWISS-PROT database:
  • Domain found in 3VCD: [BMC ] by SMART

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