3VDQ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
C, A, B, D


Primary referenceThe structures of Alcaligenes faecalis D-3-hydroxybutyrate dehydrogenase before and after NAD+ and acetate binding suggest a dynamical reaction mechanism as a member of the SDR family., Hoque MM, Shimizu S, Hossain MT, Yamamoto T, Imamura S, Suzuki K, Tsunoda M, Amano H, Sekiguchi T, Takenaka A, Acta Crystallogr D Biol Crystallogr. 2008 May;64(Pt 5):496-505. Epub 2008, Apr 19. PMID:18453685
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk]
  • Biological Unit Coordinates (3vdq.pdb1.gz) 171 Kb
  • CSU: Contacts of Structural Units for 3VDQ
  • Structure Factors (814 Kb)
  • Retrieve 3VDQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VDQ from S2C, [Save to disk]
  • Re-refined 3vdq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VDQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vdq] [3vdq_A] [3vdq_B] [3vdq_C] [3vdq_D]
  • SWISS-PROT database:

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