3VGV date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
C, D, J, L, A, M, P, E, I, G, N, B, O, K, F, H


Primary referenceA structural mechanism for dimeric to tetrameric oligomer conversion in Halomonas sp. nucleoside diphosphate kinase., Arai S, Yonezawa Y, Okazaki N, Matsumoto F, Tamada T, Tokunaga H, Ishibashi M, Blaber M, Tokunaga M, Kuroki R, Protein Sci. 2012 Apr;21(4):498-510. doi: 10.1002/pro.2032. Epub 2012 Mar 9. PMID:22275000
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (336 Kb) [Save to disk]
  • Biological Unit Coordinates (3vgv.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (3vgv.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (3vgv.pdb3.gz) 46 Kb
  • Biological Unit Coordinates (3vgv.pdb4.gz) 46 Kb
  • Biological Unit Coordinates (3vgv.pdb5.gz) 45 Kb
  • Biological Unit Coordinates (3vgv.pdb6.gz) 46 Kb
  • Biological Unit Coordinates (3vgv.pdb7.gz) 42 Kb
  • Biological Unit Coordinates (3vgv.pdb8.gz) 46 Kb
  • CSU: Contacts of Structural Units for 3VGV
  • Structure Factors (1212 Kb)
  • Retrieve 3VGV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VGV from S2C, [Save to disk]
  • Re-refined 3vgv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VGV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vgv] [3vgv_A] [3vgv_B] [3vgv_C] [3vgv_D] [3vgv_E] [3vgv_F] [3vgv_G] [3vgv_H] [3vgv_I] [3vgv_J] [3vgv_K] [3vgv_L] [3vgv_M] [3vgv_N] [3vgv_O] [3vgv_P]
  • SWISS-PROT database:
  • Domain found in 3VGV: [NDK ] by SMART

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