3VPS Transferase date Mar 12, 2012
title Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydr Tuna, Involved In Tunicamycin Biosynthesis
authors F.J.Wyszynski, S.S.Lee, T.Yabe, H.Wang, J.P.Gomez-Escribano, M.J. S.J.Lee, G.J.Davies, B.G.Davis
compound source
Molecule: Nad-Dependent Epimerasedehydratase
Chain: A, B
Synonym: Tuna
Ec: 4.2.1.-
 Organism_scientific: Streptomyces Chartreusis
Organism_taxid: 1079985
Strain: Nllr 3882
symmetry Space Group: P 1
R_factor 0.186 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.453 51.061 67.804 98.13 106.65 94.36
method X-Ray Diffractionresolution 1.90 Å
ligand NAD, UD1 enzyme Lyase E.C.4.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk]
  • Biological Unit Coordinates (3vps.pdb1.gz) 104 Kb
  • Biological Unit Coordinates (3vps.pdb2.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 3VPS
  • CSU: Contacts of Structural Units for 3VPS
  • Structure Factors (628 Kb)
  • Retrieve 3VPS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VPS from S2C, [Save to disk]
  • Re-refined 3vps structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VPS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3VPS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VPS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vps_A] [3vps] [3vps_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3VPS
  • Community annotation for 3VPS at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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