3VRD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CSS, FAD, GOL, HEC, NO3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • B


    Primary referenceStructure Analysis and Comparative Characterization of the Cytochrome c' and Flavocytochrome c from Thermophilic Purple Photosynthetic Bacterium Thermochromatium tepidum., Hirano Y, Kimura Y, Suzuki H, Miki K, Wang ZY, Biochemistry. 2012 Aug 21;51(33):6556-67. Epub 2012 Aug 9. PMID:22827326
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (3vrd.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 3VRD
  • CSU: Contacts of Structural Units for 3VRD
  • Structure Factors (3739 Kb)
  • Retrieve 3VRD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VRD from S2C, [Save to disk]
  • Re-refined 3vrd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VRD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vrd] [3vrd_A] [3vrd_B]
  • SWISS-PROT database:

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science