3VUT Transferase date Jul 05, 2012
title Crystal Structures Of Non-Phosphorylated Map2k4
authors T.Matsumoto, T.Kinoshita, Y.Kirii, T.Tada, A.Yamano
compound source
Molecule: Dual Specificity Mitogen-Activated Protein Kinase
Chain: A, B
Fragment: Unp Residues 80-399
Synonym: Map Kinase Kinase 4, Mapkk 4, Jnk-Activating Kinas Mapkerk Kinase 4, Mek 4, Sapkerk Kinase 1, Sek1, Stress-A Protein Kinase Kinase 1, Sapk Kinase 1, Sapkk-1, Sapkk1, C- Terminal Kinase Kinase 1, Jnkk;
Ec: 2.7.12.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map2k4, Jnkk1, Mek4, Mkk4, Prkmk4, Sek1, Serk1, Skk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.331 R_Free 0.407
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.773 87.362 118.373 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand
enzyme Transferase E.C.2.7.12.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal and solution structures disclose a putative transient state of mitogen-activated protein kinase kinase 4., Matsumoto T, Kinoshita T, Kirii Y, Tada T, Yamano A, Biochem Biophys Res Commun. 2012 Aug 24;425(2):195-200. Epub 2012 Jul 22. PMID:22828509
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (3vut.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (3vut.pdb2.gz) 39 Kb
  • CSU: Contacts of Structural Units for 3VUT
  • Structure Factors (134 Kb)
  • Retrieve 3VUT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VUT from S2C, [Save to disk]
  • Re-refined 3vut structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VUT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VUT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VUT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vut_B] [3vut] [3vut_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3VUT: [S_TKc ] by SMART
  • Other resources with information on 3VUT
  • Community annotation for 3VUT at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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