3VWU	Oxidoreductase	date	Sep 03, 2012
title	Crystal Structure Of Peroxiredoxin 4 From M. Musculus
authors	K.Inaba, M.Suzuki
compound		source
Molecule: Peroxiredoxin-4 Chain: A, B, C, D, E, F, G, H, I, J Synonym: Antioxidant Enzyme Aoe372, Peroxiredoxin Iv, Prx-I Thioredoxin Peroxidase Ao372, Thioredoxin-Dependent Peroxid Reductase A0372; Ec: 1.11.1.15 Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Prdx4 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 21 2 21	R_factor 0.203 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 87.468 118.656 255.669 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.30 Å
ligand		enzyme	Oxidoreductase E.C.1.11.1.15 BRENDA
Gene Ontology	Chain Function Process Component F, A, J, E, B, H, C, D, I, G peroxidase activity thioredoxin peroxidase activ... antioxidant activity peroxiredoxin activity
Primary reference	Synergistic cooperation of PDI family members in peroxiredoxin 4-driven oxidative protein folding., Sato Y, Kojima R, Okumura M, Hagiwara M, Masui S, Maegawa K, Saiki M, Horibe T, Suzuki M, Inaba K, Sci Rep. 2013 Aug 16;3:2456. doi: 10.1038/srep02456. PMID:23949117

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (287 Kb) [Save to disk] Biological Unit Coordinates (3vwu.pdb1.gz) 276 Kb CSU: Contacts of Structural Units for 3VWU Structure Factors (636 Kb) Retrieve 3VWU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VWU from S2C, [Save to disk] Re-refined 3vwu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VWU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VWU

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VWU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vwu_A] [3vwu_B] [3vwu_C] [3vwu_D] [3vwu_J] [3vwu_H] [3vwu_F] [3vwu_G] [3vwu] [3vwu_I] [3vwu_E] SWISS-PROT database: Domain organization of by SWISSPFAM

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