3WAI Transferase, Transport Protein date May 03, 2013
title Crystal Structure Of The C-Terminal Globular Domain Of Oligosaccharyltransferase (Afaglb-L, O29867_arcfu) From Arc Fulgidus As A Mbp Fusion
authors S.Matsumoto, A.Shimada, D.Kohda
compound source
Molecule: Maltose-Binding Periplasmic Protein, Transmembran Oligosaccharyl Transferase;
Chain: A
Fragment: Unp Residues Of Mbp 27-392, C-Terminal Globular D Residues 500-868;
Synonym: Mbp, Afaglb-L
Engineered: Yes
Organism_scientific: Escherichia Coli, Archaeoglobus Fulgid
Organism_taxid: 83333, 224325
Strain: K12, Dsm 4304
Gene: Male, Aglb-L
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet47b(+)
symmetry Space Group: C 1 2 1
R_factor 0.164 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
180.239 52.930 78.418 90.00 90.71 90.00
method X-Ray Diffractionresolution 1.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A
  • carbohydrate transmembrane t...


  • Primary referenceCrystal structure of the C-terminal globular domain of the third paralog of the Archaeoglobus fulgidus oligosaccharyltransferases., Matsumoto S, Shimada A, Kohda D, BMC Struct Biol. 2013 Jul 1;13(1):11. PMID:23815857
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (244 Kb) [Save to disk]
  • Biological Unit Coordinates (3wai.pdb1.gz) 238 Kb
  • CSU: Contacts of Structural Units for 3WAI
  • Structure Factors (1347 Kb)
  • Retrieve 3WAI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WAI from S2C, [Save to disk]
  • Re-refined 3wai structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WAI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WAI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WAI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wai_A] [3wai]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3WAI
  • Community annotation for 3WAI at PDBWiki (http://pdbwiki.org)

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