3WWK	Sugar Binding Protein	date	Jun 20, 2014
title	Crystal Structure Of Clec-2 In Complex With Rhodocytin
authors	M.Nagae, K.Morita-Matsumoto, M.Kato, M.Kato-Kaneko, Y.Kato, Y.Yam
compound		source
Molecule: C-Type Lectin Domain Family 1 Member B Chain: C, I, L, F Fragment: Clec-2, Unp Residues 96-221 Synonym: Clec-2 Lectin, C-Type Lectin-Like Receptor 2, Clec Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Clec1b, Clec2, Unq721pro1384 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcold
Molecule: Snaclec Rhodocytin Subunit Alpha Chain: A, D, G, J Synonym: Rhodocytin Alpha Subunit, Aggretin Alpha Chain, Rhodoaggretin Subunit Alpha;		Organism_scientific: Calloselasma Rhodostoma Organism_common: Malayan Pit Viper Organism_taxid: 8717
Molecule: Snaclec Rhodocytin Subunit Beta Chain: B, E, H, K Synonym: Rhodocytin Beta Subunit, Aggretin Beta Chain, Rhod Subunit Beta		Organism_scientific: Calloselasma Rhodostoma Organism_common: Malayan Pit Viper Organism_taxid: 8717
symmetry	Space Group: C 1 2 1	R_factor 0.282 R_Free 0.325
crystal cell	length a length b length c angle alpha angle beta angle gamma 130.851 117.072 152.238 90.00 115.78 90.00
method	X-Ray Diffraction	resolution	2.98 Å
Gene Ontology	Chain Function Process Component A, J, D, G toxin activity
Primary reference	A Platform of C-type Lectin-like Receptor CLEC-2 for Binding O-Glycosylated Podoplanin and Nonglycosylated Rhodocytin., Nagae M, Morita-Matsumoto K, Kato M, Kaneko MK, Kato Y, Yamaguchi Y, Structure. 2014 Dec 2;22(12):1711-21. doi: 10.1016/j.str.2014.09.009. Epub 2014, Nov 6. PMID:25458834

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (251 Kb) [Save to disk] Biological Unit Coordinates (3wwk.pdb1.gz) 64 Kb Biological Unit Coordinates (3wwk.pdb2.gz) 64 Kb Biological Unit Coordinates (3wwk.pdb3.gz) 64 Kb Biological Unit Coordinates (3wwk.pdb4.gz) 63 Kb CSU: Contacts of Structural Units for 3WWK Structure Factors (2324 Kb) Retrieve 3WWK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3WWK from S2C, [Save to disk] Re-refined 3wwk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WWK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3WWK

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3WWK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wwk_C] [3wwk_F] [3wwk_J] [3wwk_K] [3wwk_I] [3wwk_E] [3wwk_B] [3wwk_D] [3wwk_G] [3wwk_H] [3wwk] [3wwk_L] [3wwk_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3WWK: [CLECT ] by SMART

Other resources with information on 3WWK

Community annotation for 3WWK at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---