5AHO Crystal structure of human 5' exonuclease Apollo date
authors Allerston, C.K., Vollmar, M., Krojer, T., Pike, A.C.W., Newman, J.A., Carpenter, E., Quigley, A., Mahajan, P., Delft, F.von., Bountra, C., Arrowsmith, C.H., Edwards, A., Gileadi, O.
compound source
symmetry
R_factor
R_Free 0.2257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.16
ligand EDO, TLA, ZN enzyme
note 5AHO supersedes 3ZDK
Primary referenceThe structures of the SNM1A and SNM1B/Apollo nuclease domains reveal a potential basis for their distinct DNA processing activities., Allerston CK, Lee SY, Newman JA, Schofield CJ, McHugh PJ, Gileadi O, Nucleic Acids Res. 2015 Dec 15;43(22):11047-60. doi: 10.1093/nar/gkv1256. Epub, 2015 Nov 17. PMID:26582912
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (5aho.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 5AHO
  • CSU: Contacts of Structural Units for 5AHO
  • Structure Factors (479 Kb)
  • Retrieve 5AHO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AHO from S2C, [Save to disk]
  • Re-refined 5aho structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AHO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AHO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5AHO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aho] [5aho_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5AHO: [Lactamase_B ] by SMART
  • Other resources with information on 5AHO
  • Community annotation for 5AHO at PDBWiki (http://pdbwiki.org)

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