3BHY Crystal structure of human death associated protein kinase 3 (DAPK3) in complex with a beta-carboline ligand date
authors Filippakopoulos, P., Rellos, P., Eswaran, J., Fedorov, O., Berridge, G., Niesen, F., Bracher, F., Huber, K., Pike, A.C.W., Roos, A., Delft, F.von., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Knapp, S., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.187
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.24
ligand 7CP, CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference7,8-Dichloro-1-oxo-beta-carbolines as a Versatile Scaffold for the Development of Potent and Selective Kinase Inhibitors with Unusual Binding Modes., Huber K, Brault L, Fedorov O, Gasser C, Filippakopoulos P, Bullock AN, Fabbro D, Trappe J, Schwaller J, Knapp S, Bracher F, J Med Chem. 2012 Jan 12;55(1):403-13. Epub 2012 Jan 3. PMID:22136433
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (3bhy.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 3BHY
  • CSU: Contacts of Structural Units for 3BHY
  • Likely Quarternary Molecular Structure file(s) for 3BHY
  • Structure Factors (524 Kb)
  • Retrieve 3BHY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BHY from S2C, [Save to disk]
  • Re-refined 3bhy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BHY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BHY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BHY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bhy] [3bhy_A]
  • SWISS-PROT database: [O43293]
  • Domain organization of [DAPK3_HUMAN] by SWISSPFAM
  • Domain found in 3BHY: [S_TKc ] by SMART
  • Other resources with information on 3BHY
  • Community annotation for 3BHY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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