3L0J	Transcription	date	Dec 10, 2009
title	Crystal Structure Of Orphan Nuclear Receptor Rorgamma In Com Natural Ligand
authors	D.Martynowski, Y.Li
compound		source
Molecule: Nuclear Receptor Ror-Gamma Chain: A Fragment: Retinoic Acid-Related Orphan Receptor Gamma Synonym: Retinoid-Related Orphan Receptor-Gamma, Nuclear Re Rzr-Gamma, Nuclear Receptor Subfamily 1 Group F Member 3; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rorc, Nr1f3, Rorg, Rzrg Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Nuclear Receptor Coactivator 2 Chain: C Fragment: Src2-2 Synonym: Ncoa-2, Transcriptional Intermediary Factor 2, Hti Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ncoa2, Tif2 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 41 21 2	R_factor 0.193 R_Free 0.283
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.502 58.502 159.032 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	HC9	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural Basis for Hydroxycholesterols as Natural Ligands of Orphan Nuclear Receptor ROR{gamma}, Jin L, Martynowski D, Zheng S, Wada T, Xie W, Li Y, Mol Endocrinol. 2010 Mar 4. PMID:20203100

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk] Biological Unit Coordinates (3l0j.pdb1.gz) 45 Kb LPC: Ligand-Protein Contacts for 3L0J CSU: Contacts of Structural Units for 3L0J Structure Factors (172 Kb) Retrieve 3L0J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3L0J from S2C, [Save to disk] Re-refined 3l0j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3L0J in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3L0J

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3L0J, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3l0j_C] [3l0j_A] [3l0j] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3L0J: [HOLI ] by SMART

Other resources with information on 3L0J

Community annotation for 3L0J at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---