3UPX date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand B6A BindingDB enzyme
Gene TGGT1 ; TGVEG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMultiple determinants for selective inhibition of apicomplexan calcium-dependent protein kinase CDPK1., Larson ET, Ojo KK, Murphy RC, Johnson SM, Zhang Z, Kim JE, Leibly DJ, Fox AM, Reid MC, Dale EJ, Perera BG, Kim J, Hewitt SN, Hol WG, Verlinde CL, Fan E, Van Voorhis WC, Maly DJ, Merritt EA, J Med Chem. 2012 Feb 27. PMID:22369268
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (3upx.pdb1.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 3UPX
  • CSU: Contacts of Structural Units for 3UPX
  • Structure Factors (549 Kb)
  • Retrieve 3UPX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UPX from S2C, [Save to disk]
  • Re-refined 3upx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3UPX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3UPX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3UPX, from MSDmotif at EBI
  • Fold representative 3upx from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3upx] [3upx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3UPX: [EFh] [S_TKc ] by SMART
    • Other resources with information on 3UPX
  • Community annotation for 3UPX at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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