4AD7	Crystal structure of full-length N-glycosylated human glypican-1	date
authors	Svensson, G., Awad, W., Mani, K., Logan, D.T.
compound		source
symmetry		R_factor R_Free 0.2781
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.94
ligand	NAG	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Crystal Structure of N-Glycosylated Human Glypican-1 Core Protein: STRUCTURE OF TWO LOOPS EVOLUTIONARILY CONSERVED IN VERTEBRATE GLYPICAN-1., Svensson G, Awad W, Hakansson M, Mani K, Logan DT, J Biol Chem. 2012 Apr 20;287(17):14040-51. Epub 2012 Feb 20. PMID:22351761

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (535 Kb) [Save to disk] Biological Unit Coordinates (4ad7.pdb1.gz) 122 Kb Biological Unit Coordinates (4ad7.pdb2.gz) 143 Kb Biological Unit Coordinates (4ad7.pdb3.gz) 131 Kb Biological Unit Coordinates (4ad7.pdb4.gz) 141 Kb LPC: Ligand-Protein Contacts for 4AD7 CSU: Contacts of Structural Units for 4AD7 Structure Factors (396 Kb) Retrieve 4AD7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4AD7 from S2C, [Save to disk] Re-refined 4ad7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4AD7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4AD7

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4AD7, from MSDmotif at EBI Fold representative 4ad7 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ad7_C] [4ad7_A] [4ad7] [4ad7_B] [4ad7_D] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4AD7

Community annotation for 4AD7 at PDBWiki (http://pdbwiki.org)

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