4ADW Oxidoreductase date Jan 04, 2012
title Crystal Structure Of Leishmania Infantum Trypanothione Reduc Complex With Nadph And Trypanothione
authors P.Baiocco, A.Ilari, G.Colotti, F.Malatesta, A.Fiorillo
compound source
Molecule: Trypanothione Reductase
Chain: A, B
Ec: 1.8.1.12
Engineered: Yes
Organism_scientific: Leishmania Infantum
Organism_taxid: 5671
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28
symmetry Space Group: P 41
R_factor 0.249 R_Free 0.304
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.940 103.940 192.244 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.61 Å
ligand FAD, GCG, NDP enzyme Oxidoreductase E.C.1.8.1.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInhibition of Leishmania infantum Trypanothione Reductase by Azole-Based Compounds: a Comparative Analysis with Its Physiological Substrate by X-ray Crystallography., Baiocco P, Poce G, Alfonso S, Cocozza M, Porretta GC, Colotti G, Biava M, Moraca F, Botta M, Yardley V, Fiorillo A, Lantella A, Malatesta F, Ilari A, ChemMedChem. 2013 Jun 3. doi: 10.1002/cmdc.201300176. PMID:23733388
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (4adw.pdb1.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 4ADW
  • CSU: Contacts of Structural Units for 4ADW
  • Structure Factors (319 Kb)
  • Retrieve 4ADW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ADW from S2C, [Save to disk]
  • Re-refined 4adw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ADW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ADW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ADW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4adw_B] [4adw] [4adw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ADW
  • Community annotation for 4ADW at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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