4AMX	Lyase	date	Mar 14, 2012
title	Crystal Structure Of The Gracilariopsis Lemaneiformis Alpha- Glucan Lyase Covalent Intermediate Complex With 5-Fluoro-Gl Fluoride
authors	H.J.Rozeboom, S.Yu, S.Madrid, K.H.Kalk, B.W.Dijkstra
compound		source
Molecule: Alpha-1,4-Glucan Lyase Isozyme 1 Chain: A, B, C, D Fragment: Residues 62-1088 Ec: 4.2.2.13 Engineered: Yes		Organism_scientific: Gracilariopsis Lemaneiformis Organism_taxid: 2782 Expression_system: Ogataea Polymorpha Rb11 Expression_system_taxid: 559303
symmetry	Space Group: P 1	R_factor 0.220 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.643 97.008 135.708 80.38 83.11 85.22
method	X-Ray Diffraction	resolution	2.10 Å
ligand	5GF, AFR, CSO, GOL	enzyme	Lyase E.C.4.2.2.13 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Crystal structure of alpha-1,4-glucan lyase, a unique glycoside hydrolase family member with a novel catalytic mechanism., Rozeboom HJ, Yu S, Madrid S, Kalk KH, Zhang R, Dijkstra BW, J Biol Chem. 2013 Jul 31. PMID:23902768

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1347 Kb) [Save to disk] Biological Unit Coordinates (4amx.pdb1.gz) 344 Kb Biological Unit Coordinates (4amx.pdb2.gz) 341 Kb Biological Unit Coordinates (4amx.pdb3.gz) 339 Kb Biological Unit Coordinates (4amx.pdb4.gz) 343 Kb LPC: Ligand-Protein Contacts for 4AMX CSU: Contacts of Structural Units for 4AMX Structure Factors (11780 Kb) Retrieve 4AMX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4AMX from S2C, [Save to disk] Re-refined 4amx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4AMX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4AMX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4AMX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4amx_A] [4amx_D] [4amx] [4amx_C] [4amx_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 4AMX at PDBWiki (http://pdbwiki.org)

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