4AQD Hydrolase date Apr 16, 2012
title Crystal Structure Of Fully Glycosylated Human Butyrylcholine
authors X.Brazzolotto, M.Wandhammer, C.Ronco, M.Trovaslet, L.Jean, O.Lock P.Y.Renard, F.Nachon
compound source
Molecule: Butyrylcholinesterase
Chain: A, B
Fragment: Residues 27-557
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_cell_line: S2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmt-Bip
symmetry Space Group: P 21 21 21
R_factor 0.163 R_Free 0.232
length a length b length c angle alpha angle beta angle gamma
72.750 79.260 227.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand BAL, CL, EDO, FUL, GLY, MAN, NAG, PEG, PG4, UNX enzyme Hydrolase E.C. BRENDA
A, B

Primary referenceHuman butyrylcholinesterase produced in insect cells: huprine-based affinity purification and crystal structure., Brazzolotto X, Wandhammer M, Ronco C, Trovaslet M, Jean L, Lockridge O, Renard PY, Nachon F, FEBS J. 2012 Aug;279(16):2905-16. doi: 10.1111/j.1742-4658.2012.08672.x. Epub, 2012 Jul 12. PMID:22726956
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (373 Kb) [Save to disk]
  • Biological Unit Coordinates (4aqd.pdb1.gz) 363 Kb
  • Biological Unit Coordinates (4aqd.pdb2.gz) 183 Kb
  • Biological Unit Coordinates (4aqd.pdb3.gz) 184 Kb
  • LPC: Ligand-Protein Contacts for 4AQD
  • CSU: Contacts of Structural Units for 4AQD
  • Structure Factors (630 Kb)
  • Retrieve 4AQD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AQD from S2C, [Save to disk]
  • Re-refined 4aqd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AQD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AQD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4AQD, from MSDmotif at EBI
  • Fold representative 4aqd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4aqd] [4aqd_A] [4aqd_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AQD
  • Community annotation for 4AQD at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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