4AUT Oxidoreductase date May 21, 2012
title Crystal Structure Of The Tuberculosis Drug Target Decaprenyl Phosphoryl-Beta-D-Ribofuranose-2-Oxidoreductase (Dpre1) Fro Mycobacterium Smegmatis
authors J.Neres, F.Pojer, E.Molteni, L.R.Chiarelli, N.Dhar, S.Boy-Rottger S.Buroni, E.Fullam, G.Degiacomi, A.Lucarelli, R.J.Read, G.Zanoni D.E.Edmondson, E.De Rossi, M.Pasca, G.Riccardi, A.Mattevi, P.J.D S.T.Cole, C.Binda
compound source
Molecule: Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-Oxido
Chain: A
Synonym: Oxidoreductase, Fad-Binding
Engineered: Yes
 Organism_scientific: Mycobacterium Smegmatis
Organism_taxid: 1772
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 32 2 1
R_factor 0.202 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.139 64.139 191.204 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand FAD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis for Benzothiazinone-Mediated Killing of Mycobacterium tuberculosis., Neres J, Pojer F, Molteni E, Chiarelli LR, Dhar N, Boy-Rottger S, Buroni S, Fullam E, Degiacomi G, Lucarelli AP, Read RJ, Zanoni G, Edmondson DE, De Rossi E, Pasca MR, McKinney JD, Dyson PJ, Riccardi G, Mattevi A, Cole ST, Binda C, Sci Transl Med. 2012 Sep 5;4(150):150ra121. PMID:22956199
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (4aut.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 4AUT
  • CSU: Contacts of Structural Units for 4AUT
  • Structure Factors (378 Kb)
  • Retrieve 4AUT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AUT from S2C, [Save to disk]
  • Re-refined 4aut structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4AUT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4AUT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AUT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4aut_A] [4aut]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4AUT
  • Community annotation for 4AUT at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science