4AVP Transcription date May 28, 2012
title Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
authors C.K.Allerston, C.D.O.Cooper, T.Krojer, A.Chaikuad, P.Filippakopo P.Canning, C.H.Arrowsmith, A.Edwards, C.Bountra, F.Von Delft, O.
compound source
Molecule: Ets Translocation Variant 1
Chain: A, B, C, D
Fragment: Dna-Binding Domain, Residues 326-429
Synonym: Ets-Related Protein 81
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 1
R_factor 0.221 R_Free 0.258
length a length b length c angle alpha angle beta angle gamma
33.317 45.607 55.406 77.89 84.80 90.02
method X-Ray Diffractionresolution 1.82 Å
ligand EDO enzyme
A, D, C, B

Primary referenceStructures of the Ets Domains of Transcription Factors ETV1, ETV4, ETV5 and FEV: Determinants of DNA Binding and Redox Regulation by Disulfide bond formation., Cooper CD, Newman JA, Aitkenhead H, Allerston CK, Gileadi O, J Biol Chem. 2015 Apr 12. pii: jbc.M115.646737. PMID:25866208
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (4avp.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (4avp.pdb2.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 4AVP
  • CSU: Contacts of Structural Units for 4AVP
  • Structure Factors (940 Kb)
  • Retrieve 4AVP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AVP from S2C, [Save to disk]
  • Re-refined 4avp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AVP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AVP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4AVP, from MSDmotif at EBI
  • Fold representative 4avp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4avp_C] [4avp] [4avp_B] [4avp_D] [4avp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AVP: [ETS ] by SMART
  • Other resources with information on 4AVP
  • Community annotation for 4AVP at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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