4AWE Hydrolase date Jun 01, 2012
title The Crystal Structure Of Chrysonilia Sitophila Endo-Beta-D-1 Mannanase
authors A.M.D.Goncalves, C.S.Silva, D.De Sanctis, I.Bento
compound source
Molecule: Endo-Beta-D-1,4-Mannanase
Chain: A
Ec: 3.2.1.78
Other_details: Nag Linked To N63, Nag Linked To N319
Organism_scientific: Neurospora Sitophila
Organism_taxid: 40126
Other_details: Common Name Red Bread-Mould, Portuguese Coll Fungus (Ibet), Deposited At The Deutsche Sammlung Von Mikroorganismen Und Zellkulturen Gmbh, Germany, Under The C 16514
symmetry Space Group: P 21 21 21
R_factor 0.161 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.360 78.940 83.860 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand ACT, CL, NAG, TRS enzyme Hydrolase E.C.3.2.1.78 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEndo-beta-D-1,4-mannanase from Chrysonilia sitophila displays a novel loop arrangement for substrate selectivity., Goncalves AM, Silva CS, Madeira TI, Coelho R, de Sanctis D, San Romao MV, Bento I, Acta Crystallogr D Biol Crystallogr. 2012 Nov;68(Pt 11):1468-78. doi:, 10.1107/S0907444912034646. Epub 2012 Oct 18. PMID:23090396
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (4awe.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 4AWE
  • CSU: Contacts of Structural Units for 4AWE
  • Structure Factors (2761 Kb)
  • Retrieve 4AWE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AWE from S2C, [Save to disk]
  • Re-refined 4awe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AWE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AWE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AWE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4awe_A] [4awe]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AWE
  • Community annotation for 4AWE at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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